/cemt/A54775_3_lane_gembs

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SAMPLE A54775_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1526684896 100.00 % 763342448 100.00 % 763342448 100.00 %
General Reads 1473516292 96.52 % 738123018 96.70 % 735393274 96.34 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 36443986 2.39 % 18231534 2.39 % 18212452 2.39 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 16724618 1.10 % 6987896 0.92 % 9736722 1.28 %
Bisulfite_reads C2T 769294372 50.39 % 385277944 50.47 % 384016428 50.31 %
Bisulfite_reads G2A 740665906 48.51 % 371076608 48.61 % 369589298 48.42 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 581160051
Average Unique 76.13 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 76239166959 39.63 % 35706144860 37.12 % 40533022099 42.14 %
Base Counts Overall C 19371357823 10.07 % 744001967 0.77 % 18627355856 19.37 %
Base Counts Overall G 19943060369 10.37 % 18943540788 19.70 % 999519581 1.04 %
Base Counts Overall T 75257644788 39.12 % 40009247796 41.60 % 35248396992 36.65 %
Base Counts Overall N 1551066957 0.81 % 778213037 0.81 % 772853920 0.80 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.992435143856778
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 659701888



Mapping Quality

Mapping Quality Histogram
A54775_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54775_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C7JMAANXX_3_1
C7P30ANXX_1_1
C7P30ANXX_2_1