/cemt/mapping_coverage/A54775_3_lane_gembs
BACK
SAMPLE A54775_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1448137925 |
100% |
160095080877 |
100% |
| Mapped |
1437551410 |
99.27 % |
158771766502 |
99.17 % |
| Passed |
1086716843 |
75.04 % |
114917445627 |
71.78 % |
| NotPassed |
350834567 |
24.23 % |
43854320875 |
27.39 % |
| |
|
|
|
|
| LowMAPQ |
267955868 |
18.50 % |
33494483500 |
20.92 % |
| MateUnmapped |
10586515 |
0.73 % |
1323314375 |
0.83 % |
| Duplicate |
25864428 |
1.79 % |
3233053500 |
2.02 % |
| BadOrientation |
1134 |
0.00 % |
141750 |
0.00 % |
| LargeInsertSize |
44670 |
0.00 % |
5583750 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
56968467 |
3.93 % |
7121058375 |
4.45 % |
| Unmapped |
10586515 |
0.73 % |
1323314375 |
0.83 % |
Base Level Counts
| Bases |
# |
% |
| Total |
135813690500 |
100% |
| Passed |
109519650478 |
80.64 % |
| Trimmed |
4861089263 |
3.58 % |
| Clipped |
329680032 |
0.24 % |
| Overlapping |
20566564841 |
15.14 % |
| LowQuality |
536705886 |
0.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |