/cemt/methylation/A54775_3_lane_gembs

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SAMPLE A54775_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26452420 11230052 42.45 %
NonRefCpG 337742 95395 28.24 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54775_3_lane_gembs_coverage_refCpG.png ./IMG//A54775_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54775_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54775_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54775_3_lane_gembs_quality_refcpg.png ./IMG//A54775_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54775_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9187434 18.69 % 3748336 13.41 % 191619 30.84 % 54870 19.14 %
Intermediate (0.3-0.7) 17760634 36.13 % 8589261 30.72 % 219655 35.36 % 96735 33.75 %
Methylated (0.7-1) 22209959 45.18 % 15618067 55.87 % 209988 33.80 % 135013 47.11 %
Median Methylation 0.650 0.750 0.510 0.670