/CEMT/mapping_coverage/A54765_3_lane_gembs
BACK
SAMPLE A54765_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1273538256 |
100% |
138881216539 |
100% |
| Mapped |
1259080129 |
98.86 % |
137073950664 |
98.70 % |
| Passed |
897773823 |
70.49 % |
91910662414 |
66.18 % |
| NotPassed |
361306306 |
28.37 % |
45163288250 |
32.52 % |
| |
|
|
|
|
| LowMAPQ |
271767568 |
21.34 % |
33970946000 |
24.46 % |
| MateUnmapped |
14458127 |
1.14 % |
1807265875 |
1.30 % |
| Duplicate |
24078828 |
1.89 % |
3009853500 |
2.17 % |
| BadOrientation |
816 |
0.00 % |
102000 |
0.00 % |
| LargeInsertSize |
52872 |
0.00 % |
6609000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
65406222 |
5.14 % |
8175777750 |
5.89 % |
| Unmapped |
14458127 |
1.14 % |
1807265875 |
1.30 % |
Base Level Counts
| Bases |
# |
% |
| Total |
112197728250 |
100% |
| Passed |
87506677267 |
77.99 % |
| Trimmed |
3910529383 |
3.49 % |
| Clipped |
366045943 |
0.33 % |
| Overlapping |
19921019893 |
17.76 % |
| LowQuality |
493455764 |
0.44 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |