/CEMT/methylation/A54765_3_lane_gembs

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SAMPLE A54765_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26422717 12880655 48.75 %
NonRefCpG 383683 118842 30.97 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54765_3_lane_gembs_coverage_refCpG.png ./IMG//A54765_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54765_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54765_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54765_3_lane_gembs_quality_refcpg.png ./IMG//A54765_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54765_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5714335 11.68 % 1489281 5.17 % 187223 26.88 % 34704 10.90 %
Intermediate (0.3-0.7) 13307688 27.21 % 6042488 20.97 % 193793 27.82 % 74159 23.29 %
Methylated (0.7-1) 29892160 61.11 % 21280576 73.86 % 315510 45.30 % 209566 65.81 %
Median Methylation 0.780 0.840 0.640 0.810