/cemt/mapping_coverage/A54769_3_lane_gembs
BACK
SAMPLE A54769_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1377506724 |
100% |
149366191163 |
100% |
| Mapped |
1364921371 |
99.09 % |
147793022038 |
98.95 % |
| Passed |
954356837 |
69.28 % |
96472455288 |
64.59 % |
| NotPassed |
410564534 |
29.80 % |
51320566750 |
34.36 % |
| |
|
|
|
|
| LowMAPQ |
301467030 |
21.88 % |
37683378750 |
25.23 % |
| MateUnmapped |
12585353 |
0.91 % |
1573169125 |
1.05 % |
| Duplicate |
33595949 |
2.44 % |
4199493625 |
2.81 % |
| BadOrientation |
1652 |
0.00 % |
206500 |
0.00 % |
| LargeInsertSize |
69270 |
0.01 % |
8658750 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
75430633 |
5.48 % |
9428829125 |
6.31 % |
| Unmapped |
12585353 |
0.91 % |
1573169125 |
1.05 % |
Base Level Counts
| Bases |
# |
% |
| Total |
119265727625 |
100% |
| Passed |
91758973063 |
76.94 % |
| Trimmed |
4223114028 |
3.54 % |
| Clipped |
303901039 |
0.25 % |
| Overlapping |
22489371298 |
18.86 % |
| LowQuality |
490368197 |
0.41 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |