/cemt/methylation/A54769_3_lane_gembs

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SAMPLE A54769_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26282762 12796596 48.69 %
NonRefCpG 346871 114947 33.14 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54769_3_lane_gembs_coverage_refCpG.png ./IMG//A54769_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54769_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54769_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54769_3_lane_gembs_quality_refcpg.png ./IMG//A54769_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54769_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6178329 12.72 % 1762287 6.16 % 155847 24.66 % 30847 10.37 %
Intermediate (0.3-0.7) 13107437 26.98 % 5971823 20.87 % 176016 27.86 % 67448 22.67 %
Methylated (0.7-1) 29303345 60.31 % 20875518 72.97 % 300020 47.48 % 199281 66.97 %
Median Methylation 0.780 0.840 0.670 0.820