/cemt/mapping_coverage/A54770_3_lane_gembs
BACK
SAMPLE A54770_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1353485539 |
100% |
147633422886 |
100% |
| Mapped |
1341404432 |
99.11 % |
146123284511 |
98.98 % |
| Passed |
990010168 |
73.15 % |
102199001511 |
69.22 % |
| NotPassed |
351394264 |
25.96 % |
43924283000 |
29.75 % |
| |
|
|
|
|
| LowMAPQ |
281675164 |
20.81 % |
35209395500 |
23.85 % |
| MateUnmapped |
12081107 |
0.89 % |
1510138375 |
1.02 % |
| Duplicate |
15850763 |
1.17 % |
1981345375 |
1.34 % |
| BadOrientation |
946 |
0.00 % |
118250 |
0.00 % |
| LargeInsertSize |
42020 |
0.00 % |
5252500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
53825371 |
3.98 % |
6728171375 |
4.56 % |
| Unmapped |
12081107 |
0.89 % |
1510138375 |
1.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
123725840125 |
100% |
| Passed |
97201325021 |
78.56 % |
| Trimmed |
4412437473 |
3.57 % |
| Clipped |
402722108 |
0.33 % |
| Overlapping |
21124116506 |
17.07 % |
| LowQuality |
585239017 |
0.47 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |