/cemt/methylation/A54770_3_lane_gembs

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SAMPLE A54770_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26097340 12005781 46.00 %
NonRefCpG 368569 109432 29.69 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54770_3_lane_gembs_coverage_refCpG.png ./IMG//A54770_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54770_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54770_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54770_3_lane_gembs_quality_refcpg.png ./IMG//A54770_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54770_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5791478 12.35 % 1742081 6.52 % 177697 26.98 % 35717 12.19 %
Intermediate (0.3-0.7) 14019865 29.90 % 6278236 23.49 % 197699 30.02 % 75924 25.91 %
Methylated (0.7-1) 27084511 57.75 % 18706853 69.99 % 283218 43.00 % 181429 61.91 %
Median Methylation 0.750 0.820 0.620 0.780