/cemt/mapping_coverage/A54773_3_lane_gembs
BACK
SAMPLE A54773_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1329380470 |
100% |
145069891974 |
100% |
| Mapped |
1316320414 |
99.02 % |
143437384974 |
98.87 % |
| Passed |
931561230 |
70.07 % |
95342486974 |
65.72 % |
| NotPassed |
384759184 |
28.94 % |
48094898000 |
33.15 % |
| |
|
|
|
|
| LowMAPQ |
310713442 |
23.37 % |
38839180250 |
26.77 % |
| MateUnmapped |
13060056 |
0.98 % |
1632507000 |
1.13 % |
| Duplicate |
19091929 |
1.44 % |
2386491125 |
1.65 % |
| BadOrientation |
1074 |
0.00 % |
134250 |
0.00 % |
| LargeInsertSize |
48924 |
0.00 % |
6115500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
54903815 |
4.13 % |
6862976875 |
4.73 % |
| Unmapped |
13060056 |
0.98 % |
1632507000 |
1.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
116418358625 |
100% |
| Passed |
90715320279 |
77.92 % |
| Trimmed |
4106766043 |
3.53 % |
| Clipped |
390582487 |
0.34 % |
| Overlapping |
20685289164 |
17.77 % |
| LowQuality |
520400652 |
0.45 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |