/cemt/A54776_3_lane_gembs

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SAMPLE A54776_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1458830226 100.00 % 729415113 100.00 % 729415113 100.00 %
General Reads 1387023296 95.08 % 694851073 95.26 % 692172223 94.89 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 53677010 3.68 % 26877791 3.68 % 26799219 3.67 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 18129920 1.24 % 7686249 1.05 % 10443671 1.43 %
Bisulfite_reads C2T 732600913 50.22 % 366967504 50.31 % 365633409 50.13 %
Bisulfite_reads G2A 708099393 48.54 % 354761360 48.64 % 353338033 48.44 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 536416418
Average Unique 73.54 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 72517875251 39.45 % 32362591780 35.21 % 40155283471 43.69 %
Base Counts Overall C 18793364224 10.22 % 949918531 1.03 % 17843445693 19.41 %
Base Counts Overall G 19712376051 10.72 % 18341297828 19.96 % 1371078223 1.49 %
Base Counts Overall T 71307734554 38.79 % 39511588912 42.99 % 31796145642 34.60 %
Base Counts Overall N 1481258396 0.81 % 740907187 0.81 % 740351209 0.81 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9896864407498814
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 605673047



Mapping Quality

Mapping Quality Histogram
A54776_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54776_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C7P30ANXX_3_1
C7JMAANXX_4_1
C7P30ANXX_4_1