/cemt/mapping_coverage/A54776_3_lane_gembs
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SAMPLE A54776_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1372326381 |
100% |
150048363538 |
100% |
| Mapped |
1361505033 |
99.21 % |
148695695038 |
99.10 % |
| Passed |
1005296090 |
73.25 % |
104169577163 |
69.42 % |
| NotPassed |
356208943 |
25.96 % |
44526117875 |
29.67 % |
| |
|
|
|
|
| LowMAPQ |
286387092 |
20.87 % |
35798386500 |
23.86 % |
| MateUnmapped |
10821348 |
0.79 % |
1352668500 |
0.90 % |
| Duplicate |
15185827 |
1.11 % |
1898228375 |
1.27 % |
| BadOrientation |
1058 |
0.00 % |
132250 |
0.00 % |
| LargeInsertSize |
33558 |
0.00 % |
4194750 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
54601408 |
3.98 % |
6825176000 |
4.55 % |
| Unmapped |
10821348 |
0.79 % |
1352668500 |
0.90 % |
Base Level Counts
| Bases |
# |
% |
| Total |
125639063625 |
100% |
| Passed |
99135312434 |
78.90 % |
| Trimmed |
4469175000 |
3.56 % |
| Clipped |
414512811 |
0.33 % |
| Overlapping |
21054973651 |
16.76 % |
| LowQuality |
565089729 |
0.45 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |