/cemt/methylation/A54776_3_lane_gembs

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SAMPLE A54776_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26667815 15671172 58.76 %
NonRefCpG 302911 135664 44.79 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54776_3_lane_gembs_coverage_refCpG.png ./IMG//A54776_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54776_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54776_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54776_3_lane_gembs_quality_refcpg.png ./IMG//A54776_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54776_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8517603 16.64 % 4081324 11.43 % 135195 23.94 % 49329 14.55 %
Intermediate (0.3-0.7) 14615540 28.55 % 8632263 24.18 % 164171 29.07 % 86474 25.51 %
Methylated (0.7-1) 28055945 54.81 % 22988337 64.39 % 265340 46.99 % 203164 59.94 %
Median Methylation 0.740 0.810 0.660 0.780