/cemt/A54779_3_lane_gembs

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SAMPLE A54779_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1566957656 100.00 % 783478828 100.00 % 783478828 100.00 %
General Reads 1498081051 95.60 % 749986297 95.73 % 748094754 95.48 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 44270214 2.83 % 22139539 2.83 % 22130675 2.82 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24606391 1.57 % 11352992 1.45 % 13253399 1.69 %
Bisulfite_reads C2T 785200324 50.11 % 393046164 50.17 % 392154160 50.05 %
Bisulfite_reads G2A 757150941 48.32 % 379079672 48.38 % 378071269 48.26 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 569221206
Average Unique 72.65 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 78217797172 39.62 % 36468778832 36.94 % 41749018340 42.29 %
Base Counts Overall C 19870263191 10.06 % 863458582 0.87 % 19006804609 19.25 %
Base Counts Overall G 20403767655 10.33 % 19251069076 19.50 % 1152698579 1.17 %
Base Counts Overall T 77361990631 39.18 % 41336365969 41.87 % 36025624662 36.49 %
Base Counts Overall N 1582846007 0.80 % 798659869 0.81 % 784186138 0.79 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9920770372592611
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 649679982



Mapping Quality

Mapping Quality Histogram
A54779_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54779_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C7JMAANXX_7_1
C7NH5ANXX_4_1
C7NH5ANXX_5_1