/cemt/A54779_3_lane_gembs/C7NH5ANXX_5_1

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SAMPLE A54779_3_lane_gembs LANE C7NH5ANXX_5_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 562202158 100.00 % 281101079 100.00 % 281101079 100.00 %
General Reads 537357885 95.58 % 269055549 95.71 % 268302336 95.45 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 15874077 2.82 % 7939918 2.82 % 7934159 2.82 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8970196 1.60 % 4105612 1.46 % 4864584 1.73 %
Bisulfite_reads C2T 281649373 50.10 % 141004632 50.16 % 140644741 50.03 %
Bisulfite_reads G2A 271582589 48.31 % 135990835 48.38 % 135591754 48.24 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 204022966
Average Unique 72.58 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 28094172728 39.66 % 13110157201 37.01 % 14984015527 42.31 %
Base Counts Overall C 7127396109 10.06 % 310948228 0.88 % 6816447881 19.25 %
Base Counts Overall G 7305739060 10.31 % 6892206790 19.46 % 413532270 1.17 %
Base Counts Overall T 27746515344 39.17 % 14822880278 41.85 % 12923635066 36.49 %
Base Counts Overall N 563648667 0.80 % 282543457 0.80 % 281105210 0.79 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9921905213291495
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 232831028



Mapping Quality

Mapping Quality Histogram
C7NH5ANXX_5_1.mapq.png



Read Length

Read Length Reads
125 281101079
125 281101079



Insert Size Plot

Insert Size Histogram
C7NH5ANXX_5_1.isize.png