/cemt/mapping_coverage/A54779_3_lane_gembs
BACK
SAMPLE A54779_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1471881752 |
100% |
161239359557 |
100% |
| Mapped |
1457477992 |
99.02 % |
159438889557 |
98.88 % |
| Passed |
1055463425 |
71.71 % |
109187068682 |
67.72 % |
| NotPassed |
402014567 |
27.31 % |
50251820875 |
31.17 % |
| |
|
|
|
|
| LowMAPQ |
298430390 |
20.28 % |
37303798750 |
23.14 % |
| MateUnmapped |
14403760 |
0.98 % |
1800470000 |
1.12 % |
| Duplicate |
26814448 |
1.82 % |
3351806000 |
2.08 % |
| BadOrientation |
1218 |
0.00 % |
152250 |
0.00 % |
| LargeInsertSize |
32870 |
0.00 % |
4108750 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
76735641 |
5.21 % |
9591955125 |
5.95 % |
| Unmapped |
14403760 |
0.98 % |
1800470000 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
131903741875 |
100% |
| Passed |
103894029658 |
78.77 % |
| Trimmed |
4689396138 |
3.56 % |
| Clipped |
385690405 |
0.29 % |
| Overlapping |
22330982788 |
16.93 % |
| LowQuality |
603642886 |
0.46 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |