/cemt/methylation/A54779_3_lane_gembs

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SAMPLE A54779_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26523505 13183925 49.71 %
NonRefCpG 358774 130804 36.46 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54779_3_lane_gembs_coverage_refCpG.png ./IMG//A54779_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54779_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54779_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54779_3_lane_gembs_quality_refcpg.png ./IMG//A54779_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54779_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6286048 12.66 % 2006558 6.62 % 147678 22.34 % 33968 10.02 %
Intermediate (0.3-0.7) 15581445 31.39 % 7974653 26.33 % 209853 31.74 % 96547 28.47 %
Methylated (0.7-1) 27775471 55.95 % 20310914 67.05 % 303547 45.92 % 208561 61.51 %
Median Methylation 0.740 0.800 0.660 0.770