/EXTERNAL Roadmap/mapping_coverage/K006548_K006549_K006550_K006551_4_lane_gembs
BACK
SAMPLE K006548_K006549_K006550_K006551_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2100671160 |
100% |
122651590666 |
100% |
| Mapped |
2100671160 |
100.00 % |
122651590666 |
100.00 % |
| Passed |
1758345515 |
83.70 % |
108359100372 |
88.35 % |
| NotPassed |
342325645 |
16.30 % |
14292490294 |
11.65 % |
| |
|
|
|
|
| LowMAPQ |
141890568 |
6.75 % |
14292490294 |
11.65 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
200435077 |
9.54 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
88890174946 |
100% |
| Passed |
79481804105 |
89.42 % |
| Trimmed |
4337892281 |
4.88 % |
| Clipped |
346716443 |
0.39 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
4723762117 |
5.31 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |