/EXTERNAL Roadmap/methylation/K006548_K006549_K006550_K006551_4_lane_gembs
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SAMPLE K006548_K006549_K006550_K006551_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26748107 |
20330222 |
76.01 % |
| NonRefCpG |
325461 |
173859 |
53.42 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4393021 |
8.49 % |
1819367 |
4.30 % |
109728 |
18.18 % |
26683 |
6.43 % |
| Intermediate (0.3-0.7) |
8554732 |
16.54 % |
5993806 |
14.18 % |
115765 |
19.18 % |
69942 |
16.86 % |
| Methylated (0.7-1) |
38785722 |
74.97 % |
34459226 |
81.52 % |
378151 |
62.64 % |
318244 |
76.71 % |
| |
|
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|
|
|
|
|
|
| Median Methylation |
0.850 |
|
0.860 |
|
0.800 |
|
0.850 |
|