/EXTERNAL Roadmap/methylation/K006530_K006531_2_lane_gembs
BACK
SAMPLE K006530_K006531_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26832258 |
24258600 |
90.41 % |
| NonRefCpG |
136919 |
107226 |
78.31 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5559742 |
10.47 % |
5338303 |
10.97 % |
14745 |
5.68 % |
8345 |
3.83 % |
| Intermediate (0.3-0.7) |
7043586 |
13.27 % |
6430286 |
13.21 % |
40537 |
15.61 % |
30543 |
14.02 % |
| Methylated (0.7-1) |
40475626 |
76.26 % |
36912880 |
75.83 % |
204348 |
78.71 % |
178995 |
82.15 % |
| |
|
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|
|
|
|
|
|
| Median Methylation |
0.880 |
|
0.880 |
|
0.880 |
|
0.890 |
|