{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 55937687, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 53759530, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.11, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 195676811, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 186229620, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.17, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 42086594, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 7058105, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.167704
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 129089543, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 12239652, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.094815
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 42057596, 
            "distinct_read_pairs": 37942619, 
            "one_read_pair": 34410699, 
            "two_read_pair": 3044339, 
            "NRF": 0.902159, 
            "PBC1": 0.906914, 
            "PBC2": 11.303176
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 127806531, 
            "distinct_read_pairs": 117986001, 
            "one_read_pair": 109840922, 
            "two_read_pair": 6921448, 
            "NRF": 0.923161, 
            "PBC1": 0.930966, 
            "PBC2": 15.869645
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 35028489, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 35028489, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 116849891, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 116849891, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 28938, 
        "Np": 0, 
        "N_opt": 28938, 
        "N_consv": 28938, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 185, 
            "corr_est_frag_len": 0.342292695881752, 
            "phantom_peak": 35, 
            "corr_phantom_peak": 0.3155934, 
            "argmin_corr": 1500, 
            "min_corr": 0.1816294, 
            "NSC": 1.884566, 
            "RSC": 1.199302
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.452037724229
        }, 
        "rep1-pr1": {
            "FRiP": 0.446701044841
        }, 
        "rep1-pr2": {
            "FRiP": 0.446956716327
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.445067287977
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.149361258261, 
            "auc": 0.490067963319, 
            "ch_div": 0.183824146824, 
            "elbow_pt": 4.39727951299e-86, 
            "jsd": 0.824564665427, 
            "syn_auc": 0.494746237414, 
            "syn_elbow_pt": 0.412357511606, 
            "syn_jsd": 0.517504366824
        }
    ]
}
