/EXTERNAL Roadmap/mapping_coverage/K006532_K006533_2_lane_gembs
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SAMPLE K006532_K006533_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
6531282162 |
100% |
414340050036 |
100% |
| Mapped |
6531282162 |
100.00 % |
414340050036 |
100.00 % |
| Passed |
4749679494 |
72.72 % |
363980626236 |
87.85 % |
| NotPassed |
1781602668 |
27.28 % |
50359423800 |
12.15 % |
| |
|
|
|
|
| LowMAPQ |
503594238 |
7.71 % |
50359423800 |
12.15 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
1278008430 |
19.57 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
238636605900 |
100% |
| Passed |
221496913785 |
92.82 % |
| Trimmed |
11895638421 |
4.98 % |
| Clipped |
190053328 |
0.08 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
5054000366 |
2.12 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |