/EXTERNAL Roadmap/methylation/K006532_K006533_2_lane_gembs
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SAMPLE K006532_K006533_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26857978 |
23881902 |
88.92 % |
| NonRefCpG |
151758 |
110233 |
72.64 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6301542 |
11.87 % |
5732119 |
11.87 % |
20045 |
6.94 % |
12069 |
5.14 % |
| Intermediate (0.3-0.7) |
9106722 |
17.15 % |
8253425 |
17.10 % |
55787 |
19.31 % |
41867 |
17.83 % |
| Methylated (0.7-1) |
37679704 |
70.98 % |
34293758 |
71.03 % |
213121 |
73.76 % |
180819 |
77.02 % |
| |
|
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|
|
|
|
|
|
| Median Methylation |
0.850 |
|
0.850 |
|
0.850 |
|
0.860 |
|