/EXTERNAL Roadmap/mapping_coverage/K006534_1_lane_gembs
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SAMPLE K006534_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
4475657713 |
100% |
274007482528 |
100% |
| Mapped |
4475657713 |
100.00 % |
274007482528 |
100.00 % |
| Passed |
3481119743 |
77.78 % |
239117512229 |
87.27 % |
| NotPassed |
994537970 |
22.22 % |
34889970299 |
12.73 % |
| |
|
|
|
|
| LowMAPQ |
347289739 |
7.76 % |
34889970299 |
12.73 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
647248231 |
14.46 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
175510260137 |
100% |
| Passed |
161412962918 |
91.97 % |
| Trimmed |
8718422796 |
4.97 % |
| Clipped |
160146316 |
0.09 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
5218728107 |
2.97 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |