{
    "name": "Histone ChIP-Seq SE ENCSR218HDF;ENCSR485URZ with input ENCSR644CBZ;ENCSR792FSD", 
    "desc": "Histone ChIP-Seq SE ENCSR218HDF;ENCSR485URZ with input ENCSR644CBZ;ENCSR792FSD", 
    "flagstat_qc": [
        {
            "total": 70935239, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 65885888, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 92.88, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 74879875, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 72319330, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.58, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 50030726, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 18696746, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.373705
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 53545770, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 1994874, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.037255
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 50028719, 
            "distinct_read_pairs": 33408735, 
            "one_read_pair": 21802120, 
            "two_read_pair": 7924836, 
            "NRF": 0.667791, 
            "PBC1": 0.652587, 
            "PBC2": 2.751113
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 53514646, 
            "distinct_read_pairs": 51767886, 
            "one_read_pair": 50100802, 
            "two_read_pair": 1612674, 
            "NRF": 0.967359, 
            "PBC1": 0.967797, 
            "PBC2": 31.066912
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 31333980, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 31333980, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 51550896, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 51550896, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 14664, 
        "Np": 0, 
        "N_opt": 14664, 
        "N_consv": 14664, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 220, 
            "corr_est_frag_len": 0.154838581511809, 
            "phantom_peak": 35, 
            "corr_phantom_peak": 0.1653729, 
            "argmin_corr": 1500, 
            "min_corr": 0.1502926, 
            "NSC": 1.030247, 
            "RSC": 0.3014497
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.0440081958842
        }, 
        "rep1-pr1": {
            "FRiP": 0.0415807715876
        }, 
        "rep1-pr2": {
            "FRiP": 0.0414146198233
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0173786255936
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.280458008462, 
            "auc": 0.489520992821, 
            "ch_div": 0.146139974169, 
            "elbow_pt": 3.19606359223e-77, 
            "jsd": 0.569579229794, 
            "syn_auc": 0.50958891951, 
            "syn_elbow_pt": 0.0479894616778, 
            "syn_jsd": 0.237154467053
        }
    ]
}
