/EXTERNAL Roadmap/K006535_K006536_2_lane_gembs

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SAMPLE K006535_K006536_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 3076682210 100.00 % 1538341105 100.00 % 1538341105 100.00 %
General Reads 2804754427 91.16 % 1416223852 92.06 % 1388530575 90.26 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 169 0.00 % 89 0.00 % 80 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 271927614 8.84 % 122117164 7.94 % 149810450 9.74 %
Bisulfite_reads C2T 1463563250 47.57 % 738987498 48.04 % 724575752 47.10 %
Bisulfite_reads G2A 1341191346 43.59 % 677236443 44.02 % 663954903 43.16 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1028527295
Average Unique 66.86 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 111476859981 36.17 % 43296975844 28.50 % 68179884137 43.62 %
Base Counts Overall C 40380096645 13.10 % 2415799642 1.59 % 37964297003 24.29 %
Base Counts Overall G 41019679394 13.31 % 38625475654 25.43 % 2394203740 1.53 %
Base Counts Overall T 110889361738 35.98 % 65941754797 43.41 % 44947606941 28.75 %
Base Counts Overall N 4446626472 1.44 % 1612922390 1.06 % 2833704082 1.81 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.016957802842026446
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1298602083



Mapping Quality

Mapping Quality Histogram
K006535_K006536_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006535_K006536_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
SRX259093_3_lanes
SRX142783_5_lanes