/EXTERNAL Roadmap/K006535_K006536_2_lane_gembs/SRX142783_5_lanes
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1894488596 | 100.00 % | 947244298 | 100.00 % | 947244298 | 100.00 % |
| General Reads | 1652074245 | 87.20 % | 837677464 | 88.43 % | 814396781 | 85.98 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 4 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 242414347 | 12.80 % | 109566830 | 11.57 % | 132847517 | 14.02 % |
| Bisulfite_reads C2T | 859939948 | 45.39 % | 435971909 | 46.03 % | 423968039 | 44.76 % |
| Bisulfite_reads G2A | 792134301 | 41.81 % | 401705559 | 42.41 % | 390428742 | 41.22 % |
| Concept | Value |
|---|---|
| Unique Fragments | 638454353 |
| Average Unique | 67.40 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 67372807726 | 35.68 % | 25589680157 | 27.76 % | 41783127569 | 43.25 % |
| Base Counts Overall C | 25021106828 | 13.25 % | 1337869452 | 1.45 % | 23683237376 | 24.51 % |
| Base Counts Overall G | 25368351667 | 13.44 % | 23993704343 | 26.03 % | 1374647324 | 1.42 % |
| Base Counts Overall T | 67803235481 | 35.91 % | 40257593114 | 43.67 % | 27545642367 | 28.51 % |
| Base Counts Overall N | 3245567514 | 1.72 % | 1013303754 | 1.10 % | 2232263760 | 2.31 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 774917347 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 94 | 506455796 |
| 99 | 440788502 |
| 101 | 947244298 |
| Insert Size Histogram |
|---|
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