/EXTERNAL Roadmap/mapping_coverage/K006535_K006536_2_lane_gembs
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SAMPLE K006535_K006536_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2749348729 |
100% |
241096428079 |
100% |
| Mapped |
2675563807 |
97.32 % |
233771154211 |
96.96 % |
| Passed |
1979242943 |
71.99 % |
164578765996 |
68.26 % |
| NotPassed |
696320864 |
25.33 % |
69192388215 |
28.70 % |
| |
|
|
|
|
| LowMAPQ |
571249746 |
20.78 % |
56788375105 |
23.55 % |
| MateUnmapped |
73784922 |
2.68 % |
7170174607 |
2.97 % |
| Duplicate |
55761383 |
2.03 % |
5510585015 |
2.29 % |
| BadOrientation |
60 |
0.00 % |
5975 |
0.00 % |
| LargeInsertSize |
2873298 |
0.10 % |
285892470 |
0.12 % |
| |
|
|
|
|
| NotCorrectlyAligned |
66436377 |
2.42 % |
6607529650 |
2.74 % |
| Unmapped |
73784922 |
2.68 % |
7325273868 |
3.04 % |
Base Level Counts
| Bases |
# |
% |
| Total |
196526053993 |
100% |
| Passed |
149624712842 |
76.13 % |
| Trimmed |
7920741780 |
4.03 % |
| Clipped |
802894822 |
0.41 % |
| Overlapping |
31144393175 |
15.85 % |
| LowQuality |
7033311374 |
3.58 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |