/EXTERNAL Roadmap/methylation/K006535_K006536_2_lane_gembs
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SAMPLE K006535_K006536_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27006960 |
23917521 |
88.56 % |
| NonRefCpG |
321954 |
188017 |
58.40 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4788672 |
9.11 % |
4310605 |
8.94 % |
98620 |
16.43 % |
27507 |
6.50 % |
| Intermediate (0.3-0.7) |
4612425 |
8.78 % |
3673861 |
7.62 % |
90346 |
15.06 % |
47729 |
11.28 % |
| Methylated (0.7-1) |
43137180 |
82.11 % |
40220819 |
83.44 % |
411139 |
68.51 % |
347970 |
82.22 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.890 |
|
0.900 |
|
0.850 |
|
0.890 |
|