{
    "name": "Histone ChIP-Seq SE ENCSR621XWM with input ENCSR281NDN", 
    "desc": "Histone ChIP-Seq SE ENCSR621XWM with input ENCSR281NDN", 
    "flagstat_qc": [
        {
            "total": 8645489, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 7423586, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 85.87, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 9755359, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 8422553, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 86.34, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 5779729, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 347803, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.060176
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 6555601, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 147698, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.02253
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 5779693, 
            "distinct_read_pairs": 5458954, 
            "one_read_pair": 5154867, 
            "two_read_pair": 288624, 
            "NRF": 0.944506, 
            "PBC1": 0.944296, 
            "PBC2": 17.860147
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 6552988, 
            "distinct_read_pairs": 6410735, 
            "one_read_pair": 6273926, 
            "two_read_pair": 132930, 
            "NRF": 0.978292, 
            "PBC1": 0.978659, 
            "PBC2": 47.197217
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 5431926, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 5431926, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 6407903, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 6407903, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 41760, 
        "Np": 0, 
        "N_opt": 41760, 
        "N_consv": 41760, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 7423532, 
            "est_frag_len": 175, 
            "corr_est_frag_len": 0.098678696743296, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1034069, 
            "argmin_corr": 1500, 
            "min_corr": 0.09358598, 
            "NSC": 1.054418, 
            "RSC": 0.5185565
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.224528355032
        }, 
        "rep1-pr1": {
            "FRiP": 0.214392254341
        }, 
        "rep1-pr2": {
            "FRiP": 0.215364002083
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0801900921097
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.120654760998, 
            "auc": 0.478823368339, 
            "ch_div": 0.586080044145, 
            "elbow_pt": 2.16801830247e-18, 
            "jsd": 0.622373414052, 
            "syn_auc": 0.510578477337, 
            "syn_elbow_pt": 0.103459257009, 
            "syn_jsd": 0.267227787395
        }
    ]
}
