{
    "name": "Histone ChIP-Seq SE ENCSR974EGY with input ENCSR281NDN", 
    "desc": "Histone ChIP-Seq SE ENCSR974EGY with input ENCSR281NDN", 
    "flagstat_qc": [
        {
            "total": 32330110, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 11596975, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 35.87, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 9755359, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 8422553, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 86.34, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 7138082, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 227706, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.0319
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 6555601, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 147698, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.02253
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 7137849, 
            "distinct_read_pairs": 6970643, 
            "one_read_pair": 6859786, 
            "two_read_pair": 101978, 
            "NRF": 0.976575, 
            "PBC1": 0.984097, 
            "PBC2": 67.267313
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 6552988, 
            "distinct_read_pairs": 6410735, 
            "one_read_pair": 6273926, 
            "two_read_pair": 132930, 
            "NRF": 0.978292, 
            "PBC1": 0.978659, 
            "PBC2": 47.197217
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 6910376, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 6910376, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 6407903, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 6407903, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 21521, 
        "Np": 0, 
        "N_opt": 21521, 
        "N_consv": 21521, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 11596614, 
            "est_frag_len": 160, 
            "corr_est_frag_len": 0.166669604315847, 
            "phantom_peak": 75, 
            "corr_phantom_peak": 0.210619, 
            "argmin_corr": 1500, 
            "min_corr": 0.1543003, 
            "NSC": 1.080164, 
            "RSC": 0.2196308
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.0778058701211
        }, 
        "rep1-pr1": {
            "FRiP": 0.136175086264
        }, 
        "rep1-pr2": {
            "FRiP": 0.136690020732
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0355456982319
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.166115984972, 
            "auc": 0.484269074576, 
            "ch_div": 0.443685597412, 
            "elbow_pt": 8.66593491414e-34, 
            "jsd": 0.706854014803, 
            "syn_auc": 0.506110813982, 
            "syn_elbow_pt": 0.0922238523673, 
            "syn_jsd": 0.270749098787
        }
    ]
}