{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 87057672, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 53912240, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 61.93, 
            "paired": 87057672, 
            "paired_qc_failed": 0, 
            "read1": 43528836, 
            "read1_qc_failed": 0, 
            "read2": 43528836, 
            "read2_qc_failed": 0, 
            "paired_properly": 52605180, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 60.43, 
            "with_itself": 52988467, 
            "with_itself_qc_failed": 0, 
            "singletons": 923773, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.06, 
            "diff_chroms": 137133, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 176817872, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 173073807, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.88, 
            "paired": 176817872, 
            "paired_qc_failed": 0, 
            "read1": 88408936, 
            "read1_qc_failed": 0, 
            "read2": 88408936, 
            "read2_qc_failed": 0, 
            "paired_properly": 171003617, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.71, 
            "with_itself": 172265942, 
            "with_itself_qc_failed": 0, 
            "singletons": 807865, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.46, 
            "diff_chroms": 503576, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 23205546, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 167965, 
            "paired_opt_dupes": 1322, 
            "dupes_pct": 0.007238
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 75220911, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 718589, 
            "paired_opt_dupes": 2612, 
            "dupes_pct": 0.009553
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 23200160, 
            "distinct_read_pairs": 23032256, 
            "one_read_pair": 22865452, 
            "two_read_pair": 165732, 
            "NRF": 0.992763, 
            "PBC1": 0.992758, 
            "PBC2": 137.966428
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 75167057, 
            "distinct_read_pairs": 74449701, 
            "one_read_pair": 73740092, 
            "two_read_pair": 702144, 
            "NRF": 0.990457, 
            "PBC1": 0.990469, 
            "PBC2": 105.021323
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 46075162, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 46075162, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 46075162, 
            "paired_qc_failed": 0, 
            "read1": 23037581, 
            "read1_qc_failed": 0, 
            "read2": 23037581, 
            "read2_qc_failed": 0, 
            "paired_properly": 46075162, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 46075162, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 149004644, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 149004644, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 149004644, 
            "paired_qc_failed": 0, 
            "read1": 74502322, 
            "read1_qc_failed": 0, 
            "read2": 74502322, 
            "read2_qc_failed": 0, 
            "paired_properly": 149004644, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 149004644, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 41454, 
        "Np": 0, 
        "N_opt": 41454, 
        "N_consv": 41454, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 125, 
            "corr_est_frag_len": 0.198464437793504, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2390572, 
            "argmin_corr": 1500, 
            "min_corr": 0.1638385, 
            "NSC": 1.211342, 
            "RSC": 0.4603371
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.214712119386
        }, 
        "rep1-pr1": {
            "FRiP": 0.227783895768
        }, 
        "rep1-pr2": {
            "FRiP": 0.228066021843
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.163028623857
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.19766331486, 
            "auc": 0.494011334631, 
            "ch_div": 0.21411706847, 
            "elbow_pt": 4.20037052061e-239, 
            "jsd": 0.646555498468, 
            "syn_auc": 0.507836231673, 
            "syn_elbow_pt": 0.174152226907, 
            "syn_jsd": 0.38091833869
        }
    ]
}
