/cemt/A59693_3_lane_gembs

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SAMPLE A59693_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1451767644 100.00 % 725883822 100.00 % 725883822 100.00 %
General Reads 1390278617 95.76 % 697244458 96.05 % 693034159 95.47 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 46618489 3.21 % 23355044 3.22 % 23263445 3.20 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14870538 1.02 % 5284320 0.73 % 9586218 1.32 %
Bisulfite_reads C2T 733213122 50.50 % 367652145 50.65 % 365560977 50.36 %
Bisulfite_reads G2A 703683984 48.47 % 352947357 48.62 % 350736627 48.32 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 621978713
Average Unique 85.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 71803738790 39.25 % 28375981672 31.03 % 43427757118 47.48 %
Base Counts Overall C 18788615042 10.27 % 678553206 0.74 % 18110061836 19.80 %
Base Counts Overall G 18609440515 10.17 % 17972379261 19.65 % 637061254 0.70 %
Base Counts Overall T 72086269716 39.41 % 43667836930 47.74 % 28418432786 31.07 %
Base Counts Overall N 1634659081 0.89 % 766610503 0.84 % 868048578 0.95 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9967223558435458
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 697596822



Mapping Quality

Mapping Quality Histogram
A59693_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A59693_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C8W89ANXX_6_1
C907DANXX_2_1
C8W89ANXX_5_1