/cemt/mapping_coverage/A59693_3_lane_gembs
BACK
SAMPLE A59693_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1384095039 |
100% |
159729129222 |
100% |
| Mapped |
1372082982 |
99.13 % |
158227622097 |
99.06 % |
| Passed |
1191564603 |
86.09 % |
135662824722 |
84.93 % |
| NotPassed |
180518379 |
13.04 % |
22564797375 |
14.13 % |
| |
|
|
|
|
| LowMAPQ |
149145982 |
10.78 % |
18643247750 |
11.67 % |
| MateUnmapped |
12012057 |
0.87 % |
1501507125 |
0.94 % |
| Duplicate |
6185327 |
0.45 % |
773165875 |
0.48 % |
| BadOrientation |
36 |
0.00 % |
4500 |
0.00 % |
| LargeInsertSize |
7396 |
0.00 % |
924500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
25179638 |
1.82 % |
3147454750 |
1.97 % |
| Unmapped |
12012057 |
0.87 % |
1501507125 |
0.94 % |
Base Level Counts
| Bases |
# |
% |
| Total |
148932898875 |
100% |
| Passed |
129519879985 |
86.97 % |
| Trimmed |
5466178193 |
3.67 % |
| Clipped |
307035213 |
0.21 % |
| Overlapping |
12963038940 |
8.70 % |
| LowQuality |
676766544 |
0.45 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |