/cemt/methylation/A59693_3_lane_gembs

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SAMPLE A59693_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26929955 23209070 86.18 %
NonRefCpG 266150 198921 74.74 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A59693_3_lane_gembs_coverage_refCpG.png ./IMG//A59693_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A59693_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A59693_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A59693_3_lane_gembs_quality_refcpg.png ./IMG//A59693_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A59693_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5821725 10.96 % 3660120 7.62 % 50310 10.00 % 22178 5.35 %
Intermediate (0.3-0.7) 10448300 19.68 % 8934929 18.60 % 107762 21.41 % 78614 18.97 %
Methylated (0.7-1) 36834411 69.36 % 35430038 73.77 % 345156 68.59 % 313511 75.67 %
Median Methylation 0.830 0.840 0.820 0.850