/cemt/mapping_coverage/A59695_3_lane_gembs
BACK
SAMPLE A59695_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1265451906 |
100% |
145810475875 |
100% |
| Mapped |
1255866402 |
99.24 % |
144612287875 |
99.18 % |
| Passed |
1093822803 |
86.44 % |
124356838000 |
85.29 % |
| NotPassed |
162043599 |
12.81 % |
20255449875 |
13.89 % |
| |
|
|
|
|
| LowMAPQ |
130469890 |
10.31 % |
16308736250 |
11.18 % |
| MateUnmapped |
9585504 |
0.76 % |
1198188000 |
0.82 % |
| Duplicate |
7126224 |
0.56 % |
890778000 |
0.61 % |
| BadOrientation |
14 |
0.00 % |
1750 |
0.00 % |
| LargeInsertSize |
6524 |
0.00 % |
815500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24440947 |
1.93 % |
3055118375 |
2.10 % |
| Unmapped |
9585504 |
0.76 % |
1198188000 |
0.82 % |
Base Level Counts
| Bases |
# |
% |
| Total |
136713457875 |
100% |
| Passed |
118614988623 |
86.76 % |
| Trimmed |
5018345032 |
3.67 % |
| Clipped |
266674379 |
0.20 % |
| Overlapping |
12089945496 |
8.84 % |
| LowQuality |
723504345 |
0.53 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |