/cemt/methylation/A59695_3_lane_gembs

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SAMPLE A59695_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26907451 22365188 83.12 %
NonRefCpG 270523 193195 71.42 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A59695_3_lane_gembs_coverage_refCpG.png ./IMG//A59695_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A59695_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A59695_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A59695_3_lane_gembs_quality_refcpg.png ./IMG//A59695_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A59695_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5084565 9.62 % 2497321 5.37 % 48166 9.45 % 15119 3.72 %
Intermediate (0.3-0.7) 9261612 17.51 % 7290459 15.68 % 95544 18.75 % 61920 15.22 %
Methylated (0.7-1) 38534461 72.87 % 36703999 78.95 % 365866 71.80 % 329823 81.06 %
Median Methylation 0.850 0.870 0.840 0.870