/cemt/A59696_3_lane_gembs

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SAMPLE A59696_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1419696294 100.00 % 709848147 100.00 % 709848147 100.00 %
General Reads 1403459632 98.86 % 703758332 99.14 % 699701300 98.57 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2085481 0.15 % 1044830 0.15 % 1040651 0.15 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14151181 1.00 % 5044985 0.71 % 9106196 1.28 %
Bisulfite_reads C2T 716491567 50.47 % 359219641 50.61 % 357271926 50.33 %
Bisulfite_reads G2A 689053546 48.54 % 345583521 48.68 % 343470025 48.39 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 608824047
Average Unique 85.77 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70473566546 39.40 % 28005048242 31.31 % 42468518304 47.48 %
Base Counts Overall C 18092252804 10.11 % 653412834 0.73 % 17438839970 19.50 %
Base Counts Overall G 17973688674 10.05 % 17338096243 19.38 % 635592431 0.71 %
Base Counts Overall T 70839851919 39.60 % 42704222988 47.75 % 28135628931 31.46 %
Base Counts Overall N 1502373101 0.84 % 740086215 0.83 % 762286886 0.85 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.996479643581592
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 682692126



Mapping Quality

Mapping Quality Histogram
A59696_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A59696_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C957WANXX_8_1
C90K7ANXX_8_1
C957WANXX_7_1