/cemt/mapping_coverage/A59696_3_lane_gembs
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SAMPLE A59696_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1395976274 |
100% |
162713618512 |
100% |
| Mapped |
1384283260 |
99.16 % |
161251991762 |
99.10 % |
| Passed |
1207107376 |
86.47 % |
139105006262 |
85.49 % |
| NotPassed |
177175884 |
12.69 % |
22146985500 |
13.61 % |
| |
|
|
|
|
| LowMAPQ |
144804002 |
10.37 % |
18100500250 |
11.12 % |
| MateUnmapped |
11693014 |
0.84 % |
1461626750 |
0.90 % |
| Duplicate |
7485090 |
0.54 % |
935636250 |
0.58 % |
| BadOrientation |
16 |
0.00 % |
2000 |
0.00 % |
| LargeInsertSize |
7098 |
0.00 % |
887250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24879678 |
1.78 % |
3109959750 |
1.91 % |
| Unmapped |
11693014 |
0.84 % |
1461626750 |
0.90 % |
Base Level Counts
| Bases |
# |
% |
| Total |
150873225625 |
100% |
| Passed |
132754091729 |
87.99 % |
| Trimmed |
5578004315 |
3.70 % |
| Clipped |
314139430 |
0.21 % |
| Overlapping |
11454079933 |
7.59 % |
| LowQuality |
772910218 |
0.51 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |