/cemt/methylation/A59696_3_lane_gembs

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SAMPLE A59696_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26940025 23031749 85.49 %
NonRefCpG 266825 197572 74.05 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A59696_3_lane_gembs_coverage_refCpG.png ./IMG//A59696_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A59696_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A59696_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A59696_3_lane_gembs_quality_refcpg.png ./IMG//A59696_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A59696_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6166922 11.62 % 3701296 7.77 % 53060 10.53 % 22498 5.46 %
Intermediate (0.3-0.7) 8664177 16.33 % 7111284 14.92 % 92791 18.42 % 63017 15.29 %
Methylated (0.7-1) 38241577 72.06 % 36836431 77.31 % 357951 71.05 % 326591 79.25 %
Median Methylation 0.860 0.880 0.860 0.880