/EXTERNAL BLUEPRINT/K006394_K006407_19_lane_gembs

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SAMPLE K006394_K006407_19_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1938978230 100.00 % 969489115 100.00 % 969489115 100.00 %
General Reads 1854936510 95.67 % 930692959 96.00 % 924243551 95.33 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 33478809 1.73 % 16782286 1.73 % 16696523 1.72 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 50562911 2.61 % 22013870 2.27 % 28549041 2.94 %
Bisulfite_reads C2T 989727354 51.04 % 496624694 51.23 % 493102660 50.86 %
Bisulfite_reads G2A 898687965 46.35 % 450850551 46.50 % 447837414 46.19 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 763140106
Average Unique 78.72 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 72246043111 36.53 % 28718732479 29.04 % 43527310632 44.02 %
Base Counts Overall C 25787582885 13.04 % 1409996895 1.43 % 24377585990 24.65 %
Base Counts Overall G 25979083788 13.14 % 24608375237 24.89 % 1370708551 1.39 %
Base Counts Overall T 71721466931 36.26 % 43148821867 43.63 % 28572645064 28.89 %
Base Counts Overall N 2041602745 1.03 % 1001963252 1.01 % 1039639493 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991318265583102
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 912209016



Mapping Quality

Mapping Quality Histogram
K006394_K006407_19_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006394_K006407_19_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00019.Bisulfite-Seq.DNA_Methylation.EGAX00001345065_11
UMCG00019.Bisulfite-Seq.DNA_Methylation.EGAX00001345079_8