/EXTERNAL BLUEPRINT/K006394_K006407_19_lane_gembs/UMCG00019.Bisulfite-Seq.DNA_Methylation.EGAX00001345065_11

BACK

SAMPLE K006394_K006407_19_lane_gembs LANE UMCG00019.Bisulfite-Seq.DNA_Methylation.EGAX00001345065_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1117811134 100.00 % 558905567 100.00 % 558905567 100.00 %
General Reads 1054871769 94.37 % 528870315 94.63 % 526001454 94.11 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 28142854 2.52 % 14104520 2.52 % 14038334 2.51 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 34796511 3.11 % 15930732 2.85 % 18865779 3.38 %
Bisulfite_reads C2T 577193262 51.64 % 289448215 51.79 % 287745047 51.48 %
Bisulfite_reads G2A 505821361 45.25 % 253526620 45.36 % 252294741 45.14 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 422762976
Average Unique 75.64 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39847351799 34.95 % 16247235097 28.50 % 23600116702 41.40 %
Base Counts Overall C 16659283971 14.61 % 994726561 1.74 % 15664557410 27.48 %
Base Counts Overall G 16770168452 14.71 % 15795139621 27.71 % 975028831 1.71 %
Base Counts Overall T 39561336325 34.70 % 23400846570 41.05 % 16160489755 28.35 %
Base Counts Overall N 1178595121 1.03 % 570419985 1.00 % 608175136 1.07 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991591793365255
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 521260769



Mapping Quality

Mapping Quality Histogram
UMCG00019.Bisulfite-Seq.DNA_Methylation.EGAX00001345065_11.mapq.png



Read Length

Read Length Reads
101 558905567
101 558905567



Insert Size Plot

Insert Size Histogram
UMCG00019.Bisulfite-Seq.DNA_Methylation.EGAX00001345065_11.isize.png