/EXTERNAL BLUEPRINT/K006394_K006407_19_lane_gembs/UMCG00019.Bisulfite-Seq.DNA_Methylation.EGAX00001345079_8

BACK

SAMPLE K006394_K006407_19_lane_gembs LANE UMCG00019.Bisulfite-Seq.DNA_Methylation.EGAX00001345079_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 821167096 100.00 % 410583548 100.00 % 410583548 100.00 %
General Reads 800064741 97.43 % 401822644 97.87 % 398242097 96.99 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5335955 0.65 % 2677766 0.65 % 2658189 0.65 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15766400 1.92 % 6083138 1.48 % 9683262 2.36 %
Bisulfite_reads C2T 412534092 50.24 % 207176479 50.46 % 205357613 50.02 %
Bisulfite_reads G2A 392866604 47.84 % 197323931 48.06 % 195542673 47.63 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 340377130
Average Unique 82.90 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 32398691312 38.68 % 12471497382 29.78 % 19927193930 47.58 %
Base Counts Overall C 9128298914 10.90 % 415270334 0.99 % 8713028580 20.80 %
Base Counts Overall G 9208915336 10.99 % 8813235616 21.04 % 395679720 0.94 %
Base Counts Overall T 32160130606 38.40 % 19747975297 47.15 % 12412155309 29.64 %
Base Counts Overall N 863007624 1.03 % 431543267 1.03 % 431464357 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989755722787876
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 390948247



Mapping Quality

Mapping Quality Histogram
UMCG00019.Bisulfite-Seq.DNA_Methylation.EGAX00001345079_8.mapq.png



Read Length

Read Length Reads
101 410583548
101 410583548



Insert Size Plot

Insert Size Histogram
UMCG00019.Bisulfite-Seq.DNA_Methylation.EGAX00001345079_8.isize.png