/EXTERNAL BLUEPRINT/mapping_coverage/K006394_K006407_19_lane_gembs
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SAMPLE K006394_K006407_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1836594247 |
100% |
166921600078 |
100% |
| Mapped |
1817686962 |
98.97 % |
165011964293 |
98.86 % |
| Passed |
1470641282 |
80.07 % |
129960350613 |
77.86 % |
| NotPassed |
347045680 |
18.90 % |
35051613680 |
21.00 % |
| |
|
|
|
|
| LowMAPQ |
297256654 |
16.19 % |
30022922054 |
17.99 % |
| MateUnmapped |
18907285 |
1.03 % |
1909635785 |
1.14 % |
| Duplicate |
18375947 |
1.00 % |
1855970647 |
1.11 % |
| BadOrientation |
86 |
0.00 % |
8686 |
0.00 % |
| LargeInsertSize |
36436 |
0.00 % |
3680036 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
31376557 |
1.71 % |
3169032257 |
1.90 % |
| Unmapped |
18907285 |
1.03 % |
1909635785 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
148524229526 |
100% |
| Passed |
122144168116 |
82.24 % |
| Trimmed |
6417593577 |
4.32 % |
| Clipped |
160989897 |
0.11 % |
| Overlapping |
18402889016 |
12.39 % |
| LowQuality |
1398588920 |
0.94 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |