/EXTERNAL BLUEPRINT/K006429_22_lane_gembs

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SAMPLE K006429_22_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 993807700 100.00 % 496903850 100.00 % 496903850 100.00 %
General Reads 973096655 97.92 % 488731365 98.36 % 484365290 97.48 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3404680 0.34 % 1709285 0.34 % 1695395 0.34 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17306365 1.74 % 6463200 1.30 % 10843165 2.18 %
Bisulfite_reads C2T 502476658 50.56 % 252350705 50.78 % 250125953 50.34 %
Bisulfite_reads G2A 474024677 47.70 % 238089945 47.91 % 235934732 47.48 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 409123001
Average Unique 82.33 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38304407692 37.79 % 14524368752 28.66 % 23780038940 46.92 %
Base Counts Overall C 11828361575 11.67 % 550642818 1.09 % 11277718757 22.25 %
Base Counts Overall G 11955294947 11.79 % 11397888153 22.49 % 557406794 1.10 %
Base Counts Overall T 38264224957 37.75 % 23712421812 46.78 % 14551803145 28.71 %
Base Counts Overall N 1016096229 1.00 % 498871165 0.98 % 517225064 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9985434110403835
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 474596303



Mapping Quality

Mapping Quality Histogram
K006429_22_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006429_22_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
BC2_0.Bisulfite-Seq.DNA_Methylation.EGAX00001400367