/EXTERNAL BLUEPRINT/mapping_coverage/K006429_22_lane_gembs
BACK
SAMPLE K006429_22_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
971437562 |
100% |
85333540290 |
100% |
| Mapped |
961644369 |
98.99 % |
84344427797 |
98.84 % |
| Passed |
818796563 |
84.29 % |
69916799391 |
81.93 % |
| NotPassed |
142847806 |
14.70 % |
14427628406 |
16.91 % |
| |
|
|
|
|
| LowMAPQ |
128576002 |
13.24 % |
12986176202 |
15.22 % |
| MateUnmapped |
9793193 |
1.01 % |
989112493 |
1.16 % |
| Duplicate |
1660552 |
0.17 % |
167715752 |
0.20 % |
| BadOrientation |
14 |
0.00 % |
1414 |
0.00 % |
| LargeInsertSize |
4546 |
0.00 % |
459146 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12606692 |
1.30 % |
1273275892 |
1.49 % |
| Unmapped |
9793193 |
1.01 % |
989112493 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82693759999 |
100% |
| Passed |
65578857447 |
79.30 % |
| Trimmed |
3521347855 |
4.26 % |
| Clipped |
89514997 |
0.11 % |
| Overlapping |
12687445611 |
15.34 % |
| LowQuality |
816594089 |
0.99 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |