/EXTERNAL BLUEPRINT/methylation/K006429_22_lane_gembs

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SAMPLE K006429_22_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26851286 23540933 87.67 %
NonRefCpG 270614 185821 68.67 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006429_22_lane_gembs_coverage_refCpG.png ./IMG//K006429_22_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006429_22_lane_gembs_coverage_nonRefCpG.png ./IMG//K006429_22_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006429_22_lane_gembs_quality_refcpg.png ./IMG//K006429_22_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006429_22_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6250601 11.84 % 5360549 11.08 % 56719 11.02 % 23268 5.81 %
Intermediate (0.3-0.7) 7276384 13.78 % 5989293 12.38 % 89771 17.45 % 56578 14.12 %
Methylated (0.7-1) 39266299 74.38 % 37022362 76.54 % 368039 71.53 % 320751 80.07 %
Median Methylation 0.860 0.870 0.850 0.870