/EXTERNAL BLUEPRINT/K006389_K006402_19_lane_gembs/UMCG00014.Bisulfite-Seq.DNA_Methylation.EGAX00001345074_8

BACK

SAMPLE K006389_K006402_19_lane_gembs LANE UMCG00014.Bisulfite-Seq.DNA_Methylation.EGAX00001345074_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 871161924 100.00 % 435580962 100.00 % 435580962 100.00 %
General Reads 848099858 97.35 % 425641335 97.72 % 422458523 96.99 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5572804 0.64 % 2794189 0.64 % 2778615 0.64 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17489262 2.01 % 7145438 1.64 % 10343824 2.37 %
Bisulfite_reads C2T 437100682 50.17 % 219356912 50.36 % 217743770 49.99 %
Bisulfite_reads G2A 416571980 47.82 % 209078612 48.00 % 207493368 47.64 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 361879418
Average Unique 83.08 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 34431902796 38.75 % 13236016184 29.79 % 21195886612 47.71 %
Base Counts Overall C 9625237532 10.83 % 475035482 1.07 % 9150202050 20.59 %
Base Counts Overall G 9680837671 10.89 % 9230642773 20.78 % 450194898 1.01 %
Base Counts Overall T 34225365654 38.52 % 21044342450 47.37 % 13181023204 29.67 %
Base Counts Overall N 895172595 1.01 % 443221235 1.00 % 451951360 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988094002157544
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 414749848



Mapping Quality

Mapping Quality Histogram
UMCG00014.Bisulfite-Seq.DNA_Methylation.EGAX00001345074_8.mapq.png



Read Length

Read Length Reads
101 435580962
101 435580962



Insert Size Plot

Insert Size Histogram
UMCG00014.Bisulfite-Seq.DNA_Methylation.EGAX00001345074_8.isize.png