/EXTERNAL BLUEPRINT/methylation/K006389_K006402_19_lane_gembs
BACK
SAMPLE K006389_K006402_19_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
27018456 |
25196038 |
93.25 % |
| NonRefCpG |
264913 |
206299 |
77.87 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5514154 |
10.33 % |
5063103 |
9.95 % |
38627 |
7.65 % |
20409 |
4.80 % |
| Intermediate (0.3-0.7) |
4532084 |
8.49 % |
3950176 |
7.76 % |
56784 |
11.24 % |
35730 |
8.41 % |
| Methylated (0.7-1) |
43311019 |
81.17 % |
41883096 |
82.29 % |
409690 |
81.11 % |
368644 |
86.78 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.920 |
|
0.920 |
|
0.910 |
|
0.920 |
|