/EXTERNAL BLUEPRINT/K006420_14_lane_gembs/8761MCL.Bisulfite-Seq.DNA_Methylation.EGAX00001364655_14

BACK

SAMPLE K006420_14_lane_gembs LANE 8761MCL.Bisulfite-Seq.DNA_Methylation.EGAX00001364655_14

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1202646056 100.00 % 601323028 100.00 % 601323028 100.00 %
General Reads 1174539362 97.66 % 590060976 98.13 % 584478386 97.20 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3699356 0.31 % 1856757 0.31 % 1842599 0.31 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24407338 2.03 % 9405295 1.56 % 15002043 2.49 %
Bisulfite_reads C2T 603370590 50.17 % 303087112 50.40 % 300283478 49.94 %
Bisulfite_reads G2A 574868128 47.80 % 288830621 48.03 % 286037507 47.57 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 498922345
Average Unique 82.97 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 47490384943 38.71 % 18179151004 29.64 % 29311233939 47.79 %
Base Counts Overall C 13265462711 10.81 % 584426915 0.95 % 12681035796 20.68 %
Base Counts Overall G 13348461112 10.88 % 12787803787 20.85 % 560657325 0.91 %
Base Counts Overall T 47282475345 38.54 % 29179086001 47.57 % 18103389344 29.52 %
Base Counts Overall N 1283113601 1.05 % 604481149 0.99 % 678632452 1.11 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991719951642707
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 573335153



Mapping Quality

Mapping Quality Histogram
8761MCL.Bisulfite-Seq.DNA_Methylation.EGAX00001364655_14.mapq.png



Read Length

Read Length Reads
101 601323028
101 601323028



Insert Size Plot

Insert Size Histogram
8761MCL.Bisulfite-Seq.DNA_Methylation.EGAX00001364655_14.isize.png